PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02930_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 150aa    MW: 15582.2 Da    PI: 7.7108
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.23.7e-102751125
                        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                   C gCr+lL YP GA+sV+Ca+C +V
  GSMUA_AchrUn_randomP02930_001 27 CCGCRNLLIYPGGATSVCCAVCSAV 51
                                   99********************998 PP

2zf-LSD139.49.9e-137397125
                        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                   Cg+C+tlL+Y rGA++V+C++C+tV
  GSMUA_AchrUn_randomP02930_001 73 CGSCHTLLMYVRGASRVQCSCCHTV 97
                                   ************************9 PP

3zf-LSD137.24.9e-12111135125
                        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                    Cg+C+ lL+Y +GA+sV+Ca+C +V
  GSMUA_AchrUn_randomP02930_001 111 CGNCHMLLMYQYGARSVKCAVCSFV 135
                                    **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-102454IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-72751IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.72E-641118IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.109.7E-542132No hitNo description
TIGRFAMsTIGR010532.2E-147099IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-107397IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-9108137IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-11111135IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPVPLAPYPT PPLPLALPNS GQSQVVCCGC RNLLIYPGGA TSVCCAVCSA VTTVPPPGFL  60
EFSAGTEMAQ LICGSCHTLL MYVRGASRVQ CSCCHTVNLA PEANQVAHVN CGNCHMLLMY  120
QYGARSVKCA VCSFVTSVGA SPSTEQKPGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385724.11e-104PREDICTED: protein LSD1-like isoform X1
RefseqXP_009385725.11e-104PREDICTED: protein LSD1-like isoform X1
SwissprotQ0J7V93e-73LSD1_ORYSJ; Protein LSD1
TrEMBLM0U5V51e-104M0U5V5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02930_0011e-104(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-57lsd one like 1